Sentence examples for matrices and nucleotide from inspiring English sources

The Γ rate parameters, proportions of invariant sites, substitution rate matrices, and nucleotide frequencies were unlinked between partitions.

Human models were constructed (Table 1) using different sets of parameters (number of matrices and nucleotide string copies, distance between matrices and nucleotide strings and stringency of each sequence).

The distance between the matrices and nucleotide strings was set to twice the distance given for the corresponding human ANT promoter by default.

There is a wealth of information that surrounds each phylogenetic study, including comparative data such as morphological character state matrices and nucleotide or amino acid sequence alignments, methodological descriptions such as substitution model and provenance information.

The program supports 10 amino acid matrices and 14 nucleotide models with either a proportion of invariable sites (+I), gamma shape ASRV (+G), combined invariable and gamma distribution (+I+G), and for amino acids the observed amino acid frequencies (+F).

Our previous work has demonstrated S-phase kinase-associated protein-2 (Skp2), an F-box subunit of SCFSkp2 ubiquitin ligase, as an important mediator and common final pathway for growth factors, extracellular matrices, and cyclic-nucleotides to regulate VSMC proliferation in vitro.

The aligned sequences were exported for phylogenetic analyses as separate data matrices of nucleotide sequences and amino acid sequences, and all data matrices and trees were deposited in TreeBASE (Study accession S1459, matrix accessions M2623-M2624) [ 45].

Both the mono-nucleotide matrix and the di-nucleotide matrix were optimized in the same window.

Catsper1 nucleotide matrices and resulting phylogenetic trees are available in the TreeBASE repository (http://www.treebase.org) with accession URL: http://purl.org/phylo/treebase/phylows/study/TB2 S15721 [ 57].

The performance order of parameters – like nucleotide substitution matrices and gap-costs – as well as of programs is rated by rank tests.

To estimate the percent divergence of dengue type 3 viruses, a distance matrix of nucleotide and amino acid sequences, based on the 1023 nucleotides of E gene, was constructed (Table 1).