For each trait, the k-means clustering was repeated over the three matrices and individuals were assigned to the four different groups based on the genetic distance used to obtain the medoids.
Collinearity was assessed by examination of bivariate scatterplots, correlation matrix, mean and individual variance inflation factors, and conditional numbers.
Also, some additional files are generated automatically, including variance-covariance matrix (cov file), correlation matrix (cor file), inverse covariance matrix (coi file) and individual phi parameters and variances (phi file).
There are two general categories for detecting misfit: overall (summary) misfit, using the entire response matrix, and the individual fit (examining all items and all persons individually).
Separate flow rules are specified for the matrix and the individual fiber families.
It is employed to learn the relation between the parameter matrix and the individual core tensor.
These data were then subject to a principal components analysis (PCA) on the inter-trait correlation matrix and an individual PCA score for each fish was calculated using PAST.
Thus, 10 heart phases emerged, which were shown as multiplanar reconstructions (MPR) with 0.9 mm slice thickness, 0.45 mm increment, 512 × 512 reconstruction matrix and an individual field of view.
The R2 value gives the capacity of the X-matrix to explain (R) the variance in the Y matrix (and in individual y variables) while Q, generated by cross-validation of blocks of the data, gives its ability to predict (Q) the variance or variation in Y (or in individual y variables).
The intensity of the induced cellular responses was measured by using pooled Env peptides; T-cell epitopes were identified by using matrix peptide pools and individual peptides.
