Exact(9)
Summary: MOODS (MOtif Occurrence Detection Suite) is a software package for matching position weight matrices against DNA sequences.
The BLAST searches (blastp program) were carried out for all the proteins of 15 apicomplexan parasites using SMAT80, BLOSUM90 and BLOSUM62 matrices against SwissProt database.
To identify binding motifs for known transcription factors, we queried individual position-specific matrices against the Transfac database using the Tomtom software (http://meme.nbcr.net/meme/cgi-bin/tomtom.cgi).
We also tested matching the TRANSFAC matrices against both strands of the whole human genome with P-value 10−6, using the MLF algorithm.
The reciprocal genome-wise BLAST searches were carried out for all the proteins of 15 apicomplexan species using SMAT80, BLOSUM90 and BLOSUM62 matrices against 1215 bacterial species.
BLAST searches were carried out for all the proteins of 15 apicomplexan species using SMAT80, BLOSUM90 and BLOSUM62 matrices against SwissProt database.
Similar(51)
The most effective slang operates on a more sophisticated level and often tells something about the thing named, the person using the term, and the social matrix against which it is used.
Therefore, the FM-cooled scale provides better protection to the matrix against rust.
The next, first online step is pattern matching, where dynamically a pattern is matched in the matrix against performance requirements.
Relative recoveries were determined by comparing the % of drug recovered from serum matrix against detector response for extracted standards.
Therefore, the fluorescence signals of the nanoparticles might indicate a protective effect of the silica nanoparticle matrix against lysosomal degradation.
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