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MH broth was inoculated with bacterial colony material and incubated overnight at 37°C.
Nucleosomes were assembled to yield greater than 90% nucleosomal material and incubated with hSWI/SNF.
200 pmol of biotinylated DNA oligos (Invitrogen) were added to 1 mg of material and incubated at 4°C for 4 h.
For RNAse sensitivity, Superasin was omitted and 10 μg of RNAse A (Ambion) was added to sonicated material and incubated at 37°C for 30 min before biotinylated probe was added.
Proteinase K (100 μg) and Glycogen (20 μg) were added to the eluted ChIP material and incubated for 2h at 37°C, and DNA was twice extracted with phenol-chloroform-alcohol isoamylic acid, and precipitated with ethanol/NaCl.
Lysis buffer (800 µl) was added, samples were incubated for 20 min at room temperature, and insoluble material was removed by centrifugation at 14,000× g for 5 min. Anti-FLAG M2 beads (50 µl of a 50% slurry) were added to the soluble material and incubated for 1 hr at 4°C.
Similar(54)
Initially, 1 × 104 cells were seeded into each well containing 200 μL cell culture mediums in 96-well plate and incubated for 24 h and then added the relevant materials and incubated at 37°C with 5% CO2 for 72 h.
Antibodies were diluted according to supplementary material Table S2 and incubated overnight on a rotator at 4°C.
Capture disks with isolated material were microcentrifuged and incubated in the extraction buffer for 30 min at 42ºC.
For each scute 0.25 0.5 g material was milled and incubated overnight in 2 ml EDTA buffer, 200 μl N-Laurylsarcosidase and 20 μl Proteinase-K followed by a phenol-chlorophorm extraction with a final concentration step using Centricon©-100 columns.
All strains were plated out onto appropriate medium (for details see "Materials and methods") and incubated.
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