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Exact(7)
The low-stringency search identified 7,929 matching sequences, with 4,661 showing > 95% identity to melon unigenes.
BLAST searches using TgTASL sequences as query only revealed matching sequences with low similarity to these genomes.
However, for some insertions in the nap and car mitotypes, matching sequences with high homology could not be found in other Brassica mitotypes.
The Dot plot figure was generated using MUMmer version 3.22 [ 47] and indicates matching sequences, with codirectional and reversed regions of synteny shown in red and blue, respectively.
The QRDRs of gyrA, parC, and parE genes in the reference strain STM006/02 and the gyrB QRDR in the reference strain STM032/04 have matching sequences with the Salmonella Typhimurium reference genome LT2 (NC_003197).
The little brown bat (Myotis lucifugus) had four significant matches, while the guinea pig (Cavia porcellus), Ord's kangaroo rat (Dipodmys ordii), the common shrew (Sorex araneus), and the gray short-tailed opossum (Monodelphis domestica; Chromosome 2) each had single matching sequences with expect values <10-5.
Similar(53)
We found two clones over-expressed in our microarray experiments with matching sequence with CST11 and one of these clones had a sequence deletion.
The matched sequences with the exceeding the user defined functionality value threshold are kept.
The matched sequences with no more than two mismatches were considered as known miRNAs.
One hundred and six clones gave no results or matched sequences with unknown functions.
The matched sequences with longer than 50 bp and more than 80% identity were collected and analyzed.
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