Sentence examples for matching nucleotide from inspiring English sources

Non-matching protein alignments coming from matching nucleotide alignments were considered as genes with alternative reading frames.

We also screened the genomic sequences for matching nucleotide and amino acid sequences from known transposable elements (RepBase 17.01, [ 42]) with BLASTER.

Operations to compare genes or gene products by matching nucleotide or related sequences use a variety of bioinformatics algorithms and computer software.

In the case where only nucleotide data was available, the matching nucleotide sequence was translated using the GENESCAN webserver [ 60] using Arabidopsis thaliana to predict exon-intron structures.

Genes encoding rRNAs and proteins were identified by matching nucleotide or inferred amino acid sequences to those of K. tunicata mtDNA [ 28] through the use of MacVector (Accelrys).

Genes encoding rRNAs and proteins were identified by matching nucleotide or inferred amino acid sequences to those of Lumbricus terrestris mtDNA [ 7].

In addition, to make the process more natural, a bonus score is given to mimic stacking interactions between matching nucleotides, with each pair of adjacent matching nucleotides given an additional score 0.5.

Certain proteins help copy nucleic acids by fashioning complementary strands that carry matching nucleotides.

For each codon pair between a tRNA rule codon and mRNA, matching nucleotides are given a score of 1.0, and mismatching nucleotides are given a score of −1.5.

We demonstrate that short strings of matching nucleotides (usually 6 or 7 in length) appear more frequently in the 5' end than in the 3' end of human miRNAs.

Pairwise alignments were generated and compared among ITS sequences for similarity, which was established by dividing the number of matching nucleotides by the total length of the alignment using the online version of Needle in EMBOSS [42] [42].