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All sequences with positive matches were labeled as 16S rRNAs and used to determine the phylogenetic diversity of the active bacteria.
These recorded matches were labeled as "true positives" for reference in Receiver Operator Characteristic (ROC) analysis [ 30].
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We assigned the best matching gene model the gene name corresponding to an NCBI entry (a list of all entries used is shown in Additional File 1), other matches are labeled "putative".
If the monoisotopic mass of an envelope match was mapped to a theoretical fragment ion of the identified proteoform within 15 parts per million (ppm), the envelope match was labeled as "correct", otherwise, "incorrect".
The match was labelled First foot Friday, with fans of both teams encouraged to sit together inside the stadium.
Out of the 7,995 envelope matches, 3,726 were labeled as "correct", and 4,269 were labeled as "incorrect".
All the matched ions were labeled with different colors, b-ions were labeled with red color, y-ions were labeled with blue color.
For PREDICT microarrays all matched pairs were labeled and hybridized together to minimize microarray batch effects.
Matching read pairs were labeled erroneous when they disagreed with the consensus nucleotides in the control plasmid.
Fifty matched, caller-side transcripts were labeled as truthful or deceptive based on the subsequent adjudication of the cases.
Tumor DNA and control DNA matched for sex (Promega) were labeled by random priming with Cy5-dCTPs and Cy3-dCTPs, respectively and hybridized at 65°C for 17 h.
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