Sentence examples for matches to reference from inspiring English sources

The number of stringent matches to reference sequences went up by less than 1% in all cases (see Additional File 2, Tables S2-S7), suggesthat thet the additional effort involved in generating and combining these assemblies may not be worthwhile.

For this analysis, the true positive set contained the direct matches to reference annotations, the matches to parents of reference annotations (though not as specific as they could be, these are still valid annotations), and the estimated number of Category 1 (would result in a new annotation) novel annotations.

Each score w r is based on the matches to reference g r and employs the phylogenetic distance between the contig species and the reference genome species as a weight factor: where d is the distance between the projected contigs and s d, ) is a suitably defined scoring function.

The number of bases unique to the read between the matches to reference sequence must be no more than 12 plus 40% of the number of bases by which the read length exceeds 12 bases (if s 1 > r 2 + 1, then U = s 1 – r 2 – 1 ≤ 12 + 0.4 [ L – 12]).

Human samples as well as guinea pig samples had a fair amount of read matches to reference genes (66.7% and 60.2%, respectively) within the databases specifically created for each environment, however the fraction of assembled reads matching a cross-species database were minor at best (9.2% and 6.8% respectively, Additional file 1: Figure S1 b).

Contigs thus ordered and those matching to reference sequence were joined together into a pseudochromosome, and non-matching contigs were added at the end in random order.

The aggregated data was matched to reference chemical libraries to aid in identifying the ion set as a known metabolite or as a new unknown biochemical to be added to the library.

Placeholders are denoted in curly braces and it is possible to use pattern matching to reference multiple files at once.

MiRNAs were the major component of small RNA libraries from rESCs being 60% of sequences, which were matched to reference miRNAs in each sample.

Counts of metagenome reads that match to reference genomes with more than 90% sequence similarity are listed for the top 20 genomes in Table  3.

For detecting known miRNAs, clean reads were matched to reference miRNA precursor sequences in the rhesus macaque (miRBase version 16.0) using Blastall (-p blastn -F F -e 0.01).