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Exact(5)
Almost all of them matched with sequences in wrong reading frames.
Out of a total of 5,542 sequences, 4869 matched with sequences located between nucleotides 9,450 and 11,700 of the mitochondrial genome.
The number of alignments obtained among the Fagaceae family was very low: 122, 101, 97 and 75 sequences matched with sequences of Castanea sativa, Fagus sylvatica, Quercus suber and Castanea mollissima, respectively (Additional file 4A).
As none of the TC/EST sequences identified represented full length coding sequences, potential coding regions from the individual genomic sequences were predicted using FGENESH software (Softberry; http://linux1.softberry.com) and this information was matched with sequences obtained from the DFCI Medicago Gene Index.
Among the 8009 PF reads in the three crows matched with sequences in the bacterial 16S rRNA gene databases, the sequences mostly clustered into OTU2 were abundantly found (12% in crow 1, 54% in crow 2, and 4.0% in crow 3) and identified as the gene of the genus Helicobacter.
Similar(55)
V and J segments from all 14 fish were analyzed, and germline sequences were matched with sequence reads to demonstrate their distribution among individual fish.
Each positive searches were divided into two categories : (1) NCLDV sequences that match with sequences from viruses infecting the same host or a closely related host and (2) NCLDV sequences that match with sequences from viruses infecting a different host.
The obtained sequences were matched with the sequences stored in the National Center for Biotechnology Information (NCBI) database, using the Basic Local Alignment Search Tool BLASTT).
This analysis aimed at selecting a subset of A. vulgare genome sequences that matched with viral sequences before further in-depth analyses.
No contig sequences matched with the sequence of TaPDIL2 cDNA found in the wheat genome draft sequences.
The results of alignments all perfectly matched with DNA sequences anticipated after sequencing PCR products (data not shown).
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Justyna Jupowicz-Kozak
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