Sentence examples for matched subsequences of from inspiring English sources

The remaining ESTs matched subsequences of contributing ESTs.

The matched subsequence of the query contig that had the longest aligned region among all queries was used as the candidate transcript.

A LCB is defined as a collinear (consistent) set of exactly matched subsequences (multiple maximal unique matches, namely 'multi-MUMs') which are shared by all the chromosomes considered, appear once in each chromosome and are bordered on both sides by mismatched nucleotides.

Using the suffix array software Vmatch [ 26], perfect match subsequences of at least 17 nt long present in non-target viral families or 25 nt long present in the human genome or nontarget bacterial families were eliminated from consideration as possible probe subsequences.

The position of the best matching subsequences to discovered motifs (putative CREs) in promoter sequences, identified by the Seeder algorithm [ 7], is illustrated in Figure 2. The distribution of best matching subsequence positions (deciles) is represented in Additional file 1.

Each dimension of the feature vector is the probability, calculated by the best matching subsequence of the protein sequence to the corresponding probabilistic profile.

In fact, TS-AMIR uses n-gram modelling to match the subsequences of SSEs topology strings.

In both Brassicaceae and Fabaceae, most best matching subsequences to the TATA-box motif are also localized approximately -20 to -30 upstream of the transcriptional start.

In Fabaceae SSP gene promoters, the best matching subsequences to the TATA-box motif (motif F3) are localized between positions -20 to -30 upstream of the transcription start site (interquartile range of 7.0 bp).

Between the boundaries of these matched consecutive subsequence, EPMs can omit subsequences; thereby they contain holes.

A Perl 5.8 script then removed the vector-matching subsequences, except for the telomeric repeats of YAC vectors.