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Exact(25)
After each round of randomization, the frequencies of lengths of perfectly matched sequences were recorded.
The top candidate regions with potential regulatory functions were selected such that they contained perfectly matched sequences, were highly conserved among all species in the alignment and had dense transcription factor binding sites.
Although the SymA, SymCx and SymAc probes matched with many sequences deposited in database, none of the matched sequences were found in the DNA clone library established from the DNA extracts from the host mussels and environmental samples including bones.
Only the perfectly matched sequences were considered.
Perfectly matched sequences were retained for following analysis.
The matched sequences were removed from downstream analysis.
Similar(35)
The minimum size of matched sequences was set to 20 base pairs (bp).
Instead, parsing of genomic and read sequences followed by positional proximity of matched sequences is used to map reads onto the genome in a manner superficially reminiscent of SSAHA alignments [3].
The percent identity of the Top 20 matched sequences is averaged to obtain the T20 score.
The species distribution for matched sequences was analyzed from the best hit of each contig.
The pairwise sequence alignments between the query and the matched sequences are given, in which the genic regions are highlighted.
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