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This measure is defined for each unigene with a BLAST match to a related dataset, and is computed by simply dividing the number of bases in the matched region of the contig by the length of the best-matched sequence [ 4].
To visualize the distribution of pMAPK activated neurons we generated density heat maps at an anatomically matched region of the LA.
Additionally, the matched region of Plin2 corresponds to the entire helical bundle structure of apolipophorin, including a fifth, irregular helix, as shown in yellow in Figure 7A.
EST assemblies were estimated to contain start codons if the length upstream of the matches (BLAST score >50) in the assemblies was greater than that between the start base of the coding sequence and the matched region of the corresponding gene.
To avoid the increased redundancy, complexity and resource requirements, only the hit with the highest Z-score for every matched region of the sequence was selected for further processing; however, exceptions are made if a somewhat lower scoring hit has at least 25% larger coverage than the better one, since they may include additional domains or significant secondary structure elements.
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To quantify differences in fiber size, the areas of individual fibers were measured in several fields from matched regions of muscle in hind limb sections from wild type and Myo-CELFΔ-370 mice.
The identified potential fusion points matched regions of high genomic diversity (Ma et al, Supplementary Fig. S3 [ 7]).
In one patient, some remote BOLD clusters matched regions of hyperperfusion revealed by ictal single-photon emission computerized tomography (SPECT).
Because only the matched regions of contigs are used in the OHR measure, untranslated regions on the ends of mRNAs are not included.
One class of those siRNAs matched regions of the soybean genome on chromosomes 13, 15 and 16 that contain multiple repeats of 26S and 5.8S ribosomal RNAs.
As expected, AnABlast analysis produced a profile of discrete peaks that matched regions of annotated exons and RNA expression patterns (Fig. 3).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com