Sentence examples for match pathway from inspiring English sources

To match pathway mentions in text, we employed soft dictionary matching as term variations often cause exact string matching to fail [ 24].

Nucleotide sequences of the predicted proteins from scaffolds were retrieved BEDTools-Version-2.13.1 BEDTools-Version-2.13.1 BEDTools-Version-2.13.1h pathway datasets from curated model species.

Another interesting example is pathway 20, which is found to match pathway sce03020 'RNA polymerase' in KEGG, with an ARI score of 0.95.

Since not all nodes or edges of a pathway belonging to a record have to be present in the original network for which the matching pathway was calculated, only some elements may be highlighted in the Cytoscape network view.

Only user-selected active pathways from the results table will be queried for matching pathways.

A list of identified proteins was entered into Pathway Studio in order to determine matching pathways for each protein.

Vert and Kanehisa [ 16] used kernel methods to identify expression patterns that characterize gene sets matching pathways in a given network.

Once we know the activity pattern of the signaling pathways in the network, we can perform an automatic similarity search in the Small Molecule Mechanisms Database (SMMD) for matching pathways based on Connectivity Map data.

We also aligned annotated genes to the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway database (Ogata et al. 1999) and identified the best matched pathways for each gene.

The results suggest that a stratified approach, by use of prognostic screening with matched pathways, may have important implications for the future management of back pain in primary care[ 34].

The matching pathways from the SMMD are associated with small molecules, each with information about the small molecule concentration, the cell line with which the experiment was conducted and the microarray platform used.