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To determine if pathways affected by these NETs involved the p53 master cell cycle regulator, these eight NETs were retested in p53−/− cells.
In the case of Gram negative and alpha-proteobacterium C. crescentus, the ClpXP protease regulates the transcription of cell division genes via degradation of the master cell cycle regulator, CtrA [11], [18].
As FoxM1 is a master cell cycle gene for many cell cycle proteins, we deleted FoxM1 from DP thymocytes by crossing floxed FoxM1 mice [23] to two different T cell specific Cre transgenic mice (lck-Cre and CD4-Cre) [24], [25].
Given the role of FoxM1 as a master cell cycle regulator in other cell types [23], [28], [33], including mature T cells (this report), it is surprising to see that cyclin B1 is the only protein whose expression is being affected in FoxM1-deficient DP thymocytes.
Notably, genes associated with the cell cycle and proliferation, including the master cell cycle regulatory genes E2F1 and p21, were over-represented.
For example, CtrA is a master cell cycle response regulator that contributes to swarmer cell differentiation in Caulobactor crescentus [ 57, 58].
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Blr2191 is a ChpT histidine phosphotransferase, well characterized in Caulobacter crescentus, a model organism in cell-cycle studies [ 101]; in this bacterium, the protein controls, via phosphorylation, the activity of the master cell-cycle regulator CtrA [ 102, 103].
Target prediction showed that BMI1, a transcription factor necessary for hematopoietic stem cell (HSC) and leukemia stem-cell self-renewal (27, 28), is the putative target of both miR-27a and miR-128b, while E2F1, a master cell-cycle regulator, is the target of miR-223 (29).
The master cell-cycle regulators Fkh1 and Fkh2 have many interaction partners; the cell-cycle regulators Mcm1 and Yox1 are connected; the RP regulators Fhl1, Rap1, and Sfp1 are connected; heme-activator proteins Hap1, Hap2, Hap3, and Hap4 are connected; sulfur amino acid biosynthesis regulators Met4 and Met32 are connected; and glycolysis regulators Gcr1 and Gcr2 are connected.
Altogether, these results demonstrate that vitamin D hampers proliferation by targeting several key masters of cell cycle progression.
In cancer cells, MELK forms a protein complex with the transcription factor/oncogene FOXM1, a master regulator for cell cycle progression [35].
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