Sentence examples for master alignment from inspiring English sources

The other MSX sequences were then aligned to the master alignment, once again in three separate blocks.

Non-aligned N-ends were trimmed, leaving the master alignment presented in Figure 4 and Additional file 3. A consensus HyPRP pattern was developed on the basis of this alignment and verified by MyHits pattern search of the Arabidopsis GenBank proteins at the MyHits website [ 44, 45], where it retrieved the majority of the previously known HyPRP genes.

Re-generate MAPGAPS profiles using the new master alignment of consensus sequences as a template and re-aligned group alignments.

Based on a broad range master alignment, specific Trichoderma primers (ITSTrF/ITSTrR) were designed that comprise an approximate 650 bp fragment of the internal transcribed spacer region from all taxonomic clades of the genus Trichoderma.

At this step, an unweighted consensus master alignment was generated.

The resulting master alignment maintained all of the conserved motifs in register.

Multiple subset alignments, to be used in comparative analyses, were extracted from the master alignments based on their metadata values, using the Antigenic Variability Analyzer (AVANA, http://avana.sourceforge.net), developed by the authors to support information-theoretical analysis tasks [17], [18].

Alignments were converted to the SAM format, then merged and sorted into one master binary alignment file (BAM format) with SAMtools 0.1.18.

The final blast (blunt-end master-slave) alignments together with the predicted secondary structure were used to generate a set of query profile HMMs using HHmake from the HHsearch package [ 25].

Once you understand what's really going on, you too can be a master of Time Alignment.

For each of the eleven influenza proteins, a master multiple sequence alignment (MSA) was constructed using the MUSCLE 3.6 [16] software.