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Then the contour planes instead of virtual masks were converted into binary image.
The anatomical T1 image was registered to the functional images using the local Pearson correlation cost function [ 28], and all masks were converted to EPI space.
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Each mask was converted into a 3D model using the " calculate 3D" function.
The femora mask was converted into a three-dimensional model and then converted into a stereo lithography (STL) model and orthogonally cut into sections after measuring 10 mm intervals from the center of the lesser trochanter, T, as shown in Figure 1.
As rnazWindow.pl assumes lower case nucleotides to be masked, the alignments were converted to upper case letters beforehand; (7) dRNA-seq: cDNA libraries were mapped with segemehl (v.0.0.9.3) [ 73] applying the parameters -m 12 -D 1 -e 2 -p 4 -X 8 -A 90 -E 5.0.
After processing EST sequences such as sequence cleaning, vector masking and clustering, all ESTs were converted into fasta format.
The above-mentioned thresholded tracks were converted into binary masks from which volumes (voxel count) and mean FA were extracted within MRtrix.
These images were converted to grayscale and placed within a gray oval mask (occluding hair, clothing, etc).. Regions of each image not occluded by the mask were equated for luminance mean and range.
Only two prototypes were converted.
Given a central pixel in the image, the eight-directional edge response values are computed by Kirsch masks, and are converted to absolute values.
The CD34 mask image was converted to a 32 bit euclidean distance transformation, in which each grey value corresponds to the distance (in pixels) to the nearest microvessel.
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