Sentence examples for masking database from inspiring English sources

These suggest that genome quality and repeat masking database do not significantly influence the results.

have discovered dozens of new families of LTR retrotransposons that make up a good portion of the maize genome, but have low copy numbers (less than 100 per genome) that have led to their current absence from any repeat-masking database.

1 The extra cysteine in proteins containing nine cysteines or residue substituted for cysteine in proteins containing seven cysteines is underlined. 2 determined by tBLASTn search of non-human, non-mouse ESTs, limited to Triticum, word size 2, expect 30000, PAM30, no compositional adjustment, no filters, no masks, database last searched on 7/22/09.

> -wrap-foot> For masked databases, indexed MegaBLAST searches with the query also masked for repeats were done to evaluate if masking the query makes sense when the database is masked already.

> -wrap-foot> For masked databases, indexed MegaBLAST is consistently faster than baseline across all query sets, as shown by Table 4.

Three underlying databases (unmasked, SEG or CAST masking with default parameters) are provided, with the masked databases being a unique feature of this service; this configuration is shown to improve database search results (Kirmitzoglou, 2014; Kirmitzoglou et al., in preparation).

Following this work, simple sequence segments were usually masked during database searches and therefore they did not receive wide attention for a long time.

In these runs, the baseline search is not performed with the query unmasked because baseline MegaBLAST cannot utilize database masking information.

These sequences are grouped into batches (or jobs) for efficient searching with Exonerate in step 2. 2) run_probe_search takes the set of sequences specified by a particular job, searches them against the target genome, and parses the Exonerate output results, storing the hits, including their scores, location, and masked sequence content (as ascertained from the soft-masking) in the database.

Table 1 lists the difference in the number of pixels belonging to edges between cover image and its modified images by masking 2LSB for BOSSbase database ver. 1.01 of 10,000 natural images.

Therefore, only the database was masked before doing the comparison and all other masking was deactivated.