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These reads were blasted against a repeat masked version of the macaque genome.
To account for allele bias, we made a "masked" version of the reference genome with these ambiguity codes at locations of SNPs in dbSNP [ 61].
When Alu repeats as well as all other repeating sequences are removed from the genome, using the "masked" version of the human genome (see Methods), the high and sharp CG-peaks at positions 31 and 62 bases disappear.
Selective attention to social threat was measured using a supraliminal (unmasked) and a subliminal (masked) version of a pictorial emotional Stroop task, comparing color-naming latencies of neutral and angry faces.
Throughout the ballet, Junor Souza dances a masked version of the character while Vadim Muntagirov, who also plays the nephew of the magician Drosselmeyer (Fabian Reimair), dances him unmasked.
Much later, he had a dream that those comics had turned up to join the chorus of his masked version of the Oresteia of Aeschylus, in Peter Hall's renowned production for the National Theatre.
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We compared the unmasked and repeat-masked version of ATLCOD1A, and found most of the AFGP cds that survived the STR/SSR culling (shown in Figure 2B, C) became masked (highlighted in Additional file 1), rendering the AFGP genotype essentially non-existent prior to protein gene annotation.
So who is that model, shockingly defrocked by a full-masked version of the Phantom of the Opera?
The influence of recurrent motifs within the intergenic regions was tested by using a hard-masked version of the genome and trimming the intergenic portions by 200 bp at each end.
Figure 7 shows spacing plots for four random genomes (generated using human genome as a template), the complete actual human genome and the repeat-masked version of the human genome.
A masked CAF1 version of D. mojavensis genome, which is available at FlyBase website ftp://ftp.flybase.net/genomes/aaa/transposable_elements/ReAS/v1/CAF1_masked/, was used as reference for these blast searches.
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