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Consequently, for closely linked markers with less than 2 cM apart, only the one with less missing data or presented in the previously published maps (anchor markers) were kept in the final linkage map (Ahfock et al. 2014).
Only linkage groups with at least four SNP markers were kept and used in QTL mapping.
Due to inadequate amplification yield, low specificity, or unexpected size, only 15 markers were kept.
After filtering markers with minor allele frequency (MAF) less than 0.05, 10,021 markers were kept for analysis.
Only the informative markers were kept, that is, heterozygote for at least one of the two F1 parents.
After data cleaning, 10,021 SNP markers were kept for the whole genome scan using methods described in the previous section.
Similar(52)
Only one of the markers was kept from the similar loci for linkage mapping analysis.
The added pathway marker was kept in the feature set if the AUC increased, and it was removed otherwise.
Discordance between the multiple runs of a marker was kept below 7% of the total number of RHs.
To select markers, an increasing proportion of SNP were sequentially removed solely considering their map position, so that for instance: to reduce a panel to 50%, every second marker was kept for analysis, for 25% every fourth was kept and so on.
To verify root infection by 15 dpi, 10 plants from each of the inoculated R and S groups (based on marker detection) were kept in pots until 21 dpi for examination of root symptoms.
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