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Otherwise, the multi-allele markers were based on different point mutation positions within the locus that had more than two restriction sites.
Most of the new markers were based on the indel between Nipponbare and an indica cultivar 93 11 (Shen et al. 2004) or those between Nipponbare and Kasalath or an indica cultivar Guangluai 4 (Monna et al. 2006).
The orientations and distances between the markers were based on Nipponbare sequence information (http://www.gramene.org/markers/microsat/). QTL analysis for 5 traits revealed that there was a significant peak near the marker RM194 for the TGW, CL, SPP, SB, and GW, and a peak near RM18076 (Table 2).
Locations of the SNP markers were based on those of the human reference sequence (http://genome.ucsc.edu) of May 2004 (hg 17, build 35).
The order and distance of markers were based on the USDA-MARC linkage map.
Coordinates for markers were based on the genetic map previously described (Cox et al. 2009).
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Detecting QTLs by linkage to molecular markers is based on the marginal effects of the markers on the trait and estimates of the main QTL effects are biased in the face of epistasis.
Markers are based on Gramene (O.
The orientation of the SSR markers was based on the SSR maps (McCouch et al. [2002]).
Most of the markers are based on clinical risk scores.
These two markers are based on ESTs Cntg4252 and Cntg10192.
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