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The SSR markers were assigned to linkage groups (LGs) based on a maximum recombination fraction of 0.34 and a minimum logarithm of odds (LOD) score of 6.0.
Markers were assigned to chromosome using one or more of the following methods.
Two hundred thirty-seven informative markers were assigned to 10 chromosomes using Mapmaker 3.0 at LOD>3.0.
Another set of eight published microsatellite markers were assigned to locations proximal to B3-1 (Figure 2B).
Using allelic homology with the 3,177 maternally derived markers, the paternal markers were assigned to chromosomal linkage groups, where possible.
Several markers were assigned to multiple chromosomes.
The markers were assigned to 24 linkage groups.
Once the markers were assigned to linkage groups relative marker order was determined as described below.
Markers were assigned into linkage groups at an independence test LOD score of 10.
Markers were assigned to their genomic locations using the dense consensus chicken genetic map [ 27, 28].
In contrast, earlier markers were assigned a sequential number [ 30- 33].
More suggestions(15)
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microsatellites were assigned
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markers were placed
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