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The average marker density (i.e. average distance in kb between two adjacent markers) was equal to 61.0 kb, ranging from 54.6 to 70.9 kb, and the average r 2 between adjacent markers within each 1 Mb window was 0.237, ranging from 0.192 to 0.269.
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For most samples the expression levels of lymphocyte markers were equal.
For biallelic markers, D' is equal to 1 if one or more of the four possible haplotypes is absent, and is < 1 if all four possible haplotypes are present.
If r 2 between two markers is equal in two populations, but their corresponding r has opposite sign, the gametic phase is reversed [ 16].
Marker data obtained were filtered using the following criteria: 1) monomorphic markers were removed; 2) markers were deleted when the frequency of heterozygotes per marker was equal to or higher than 5%, and 3) markers were deleted when the frequency of no-calls (NC) was equal to or higher than 50%.
The obvious message from the graph is that, when D' = 1.0, the PAFs explained by the causative allele and by the marker are equal.
An equal population recombination rate (2Nr) of 1 between adjacent markers was specified.
In comparison AI was less sensitive than CXCL13 [94.1% vs. 85.7%], whereas specificity of both markers was almost equal [ 3].
Quantification of the area occupied by the markers was performed on equal areas of the pyramidal layer (=total area) from the different genotypes.
The polymorphism rate of the tested SSR markers was almost equal to or slightly higher than the corresponding rates (73.4/65.9, 57.9, 69.5%) for the previously developed SSR markers from GSSs (mainly BESs)/unique transcripts of B. napus, BACs of B. rapa and WGSs of B. oleracea.
In total, 4626 SLAF and one SSR markers were assigned to 30 LGs, which equals the chromosome number identified by Yabu et al [ 41].
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