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For each gene in this network, we identified its smallest P value using the CATIE [30] and GAIN [31] GWAS markers that mapped to these genes and used the P value to represent its significance signal.
However, Co12b had six markers that mapped to Ots34 and three markers that mapped to Ots11p.
SNP markers that mapped uniquely to the assembled genome were considered for further analysis.
We included markers that mapped within 10 kb of each candidate gene according to NCBI36/hg18.
The recombinants were further genotyped using the markers that mapped between the flanking ones.
The presence or absence of pUPD was confirmed by microsatellite analysis using markers that mapped to 11p15.5 [ 28].
Similar(23)
For eight of the eleven metabolites analyzed, Random Forest selected at least one marker that mapped in the QTL interval for the respective metabolites in the biparental QTL studies.
In the maps generated in the present study, the marker loci that mapped to the ends of LGs in previous studies were excluded, and the intervals between the markers were shorter than those in previous maps.
A microsatellite marker (D8S373) that mapped within the only other candidate autozygous region >2 Mb was demonstrated to be heterozygous in two affected foetuses and so excluded linkage to the chromosome 8 candidate interval (data not shown).
The set of 753 non-DArT markers contained 66 markers (8.8%) that mapped to 2 to 8 different loci each (Additional File 4, 8).
Marker names and positions were provided in the input map files, along with a file specifying the synonymous names of the same markers that were mapped in different maps (Additional file 4 and on the SGN database [ 37]).
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