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Of the 357 genomic scaffolds that aligned with more than one marker, 168 scaffolds aligned with markers on different LGs and 189 scaffolds aligned with markers from the same LG.
Furthermore, isolates from subgroups IId and IIe contained the 1F8 polymorphic markers on different chromosome bands supporting a genetic exchange event that resulted in chromosomes V and IX of T. cruzi strain CL Brener.
However, several markers on different chromosomes were also in complete LD: this was the case for 8 markers in an interval between 32.3 and 35.1 Mb on chr 2, for 9 markers in an interval between 3.2 and 6.9 Mb on chr 6 and for 5 markers in an interval between 11.0 and 11.7 Mb on chr 10.
Unadjusted P values are presented since this study is preliminary and is the first to begin to explore cellular markers on different blood cells.
The present database contains 512 correspondences between markers on different Allium maps.
There were no significant interactions between TRD markers and markers on different homology groups.
Similar(48)
LD was evaluated on the whole genome and on each LG by calculating the correlation coefficient r between each pair of markers located on the same LG (linked markers) and for pairs of markers located on different LGs (unlinked markers).
Alternatively, these findings could be the result of associated alleles of each marker on different haplotypes with the actual risk-conferring variant(s) in the two samples.
The average r2 for marker pairs with markers located on different linkage groups was 0.16.
Previous studies selected markers based on different datasets and marker types using only one of the methods at a time, and there has not yet been a formal comparison of the performance of these methods.
The number of SSR markers varied on different chromosomes: with highest number of 21 markers on chromosome 2, followed by 17 markers on chromosome 1, 11 markers each on chromosomes 9 and 12, on other chromosomes number of markers varied from 4 to 9 and lowest of four markers on chromosome 8, with an average density of one marker for every 3 MB.
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