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These proteins are used as markers for pathogen response and are induced by different biotic and abiotic stresses [ 64].
Formation of particles with 84 amendable, surface-exposed C-termini offers significant potential for the amplification of signals or markers for pathogen detection and the diagnosis of diseases.
On the other hand, in gilthead sea bream chronically exposed to E. leei, IFNs and IFN-stimulated genes were hypothesized as markers for pathogen resistance due to their up-regulation in exposed but not parasitized fish [ 17].
To assist in the rapid identification of markers for pathogen resistance and crop traits, and to accelerate breeding programs, we generated a framework map for M. esculenta Crantz from reduced representation sequencing [genotyping-by-sequencing (GBS)].
For example, SRAP markers have been devoted to the identification of markers for pathogen resistance in agronomic crops (Liu et al., 2008; Li et al., 2010; Saha et al., 2010a, 2010b; Zhao et al., 2010; Devran et al., 2011), as well as variation in those pathogens (Baysal et al., 2009; Pasquali et al., 2010; Devran et al., 2011; Devran and Baysal, 2012; Irzykowska et al., 2012).
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In addition, we found that the expression of marker genes for pathogen associated molecular pattern (PAMP) triggered immunity (PTI) is reduced in Xa21 plants silenced for XIK1.
GST has been proposed as a marker gene for pathogen reactions, and an increase in transcript level of GST gene has been shown to be relevant to pathogen challenge [ 28].
Whereas these examples show the power of genomics to advance basic research, genomics can and will have a significant role in deciphering pathogen population structure and its relationship to disease, as well as in the development of diagnostic markers for plant pathogens.
rDNA sequences, including the internal transcribed spacer (ITS) region, are widely used to develop molecular diagnostic markers for plant pathogens.
The expression levels of five representative defense genes that are regulated through different defense signaling pathways and three marker genes for pathogen-associated molecular patterns-triggered immunity (PTI) were analyzed and compared between the pTRV2-SlSR1 and pTRV2-SlSR3L-infiltrated plants and the pTRV2-GUS-infiltrated plants.
The peptidoglycan fragments from cytoplasm-dwelling bacteria could, therefore, be available for recognition by NOD2 and initiate Nod-dependent cellular responses, making this gene a potential marker for this pathogen infection.
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