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Both classification error and the number of discovered markers are computed.
However, we think the essential improvement of the new method is that the external markers are computed based on the contextual information.
Our approach differs from the previous approaches predominantly in terms of how subnetwork markers are computed.
For breast cancer TP53 wildtype versus mutant markers are computed using GSE3494 and classification is performed by leave-one-out cross-validation in the same dataset.
For colon cancer with versus without liver metastasis, markers are computed using GSE8671 or GSE10950 and classification is performed by leave-one-out cross-validation in GSE6988.
Similar(55)
Genetic distances between markers were computed using Kosambi mapping function.
For each marker pair, the physical distance between markers was computed on a chromosome basis.
The distances between all possible pairs of markers were computed by Euclidean distance.
The phosphorylated/total ratio of MFIs for the protein markers was computed.
The average genetic distances between common adjacent markers were computed, to determine the positions of the other markers.
Linkage disequilibrium (LD) between markers was computed as the square of the correlation coefficient between genotype band frequencies, r.
More suggestions(15)
markers are accumulated
parameters are computed
markers are estimated
markers are evaluated
markers are allocated
identifiers are computed
markers are listed
markers are needed
markers are suppressed
markers are stowed
markers are confirmed
markers are treated
markers are considered
markers are set
markers are referred
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