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Null alleles (alleles which failed to amplify reliably for a particular microsatellite, leading to errors in the final data) were estimated using the programme CERVUS 3.0.33333.One marker was excluded from subsequent analyses as it was associated with a high estimated proportion of null alleles.
One marker was excluded from the analysis due to a lack of linkage to its expected surrounding markers.
This marker was excluded from all analyses.
One patient for each marker was excluded owing to inconclusive staining.
On this basis, one marker was excluded from the unadjusted association and one from the adjusted association.
For example, a rat QTL marker was excluded if it was within a rat QTL but outside of a homologous mouse QTL.
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Patients missing data for any immunohistochemical marker were excluded (n = 3).
Because of that, several SAMPLs, SNPs and one microsatellite marker were excluded.
LD blocks without neighboring markers within 300 kb of the focal marker are excluded from this figure.
Patients with inadequate samples to analyse for a particular marker were excluded from that specific statistical analysis.
Cells co-expressing the reporter and this marker were excluded from the B-cell follicles, but were concentrated in T-cell-rich regions (Fig. 6L).
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