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This CAPS marker was called D-Scar7 (Fig. 3).
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These markers are called candidate genes, and they were generally chosen to be genotyped since they were located in a particular chromosome region suspected of being involved in the outcome or its protein product may suggest that it could influence the outcome being investigated.
The best-known of these markers are called "zebrins", because staining for them gives rise to a complex pattern reminiscent of the stripes on a zebra.
These bin boundary markers are called the 'core bin markers'.
A genotyped animal was excluded if less than 95% of all SNP markers were called.
The dependency between alleles of nearby markers is called LD (Purcell et al., 2007).
This assumption, which does not hold for close markers, is called linkage equilibrium.
If a marker has only one neighbor, and the two markers are called opposite genotypes, both are considered ambiguous.
RAPD markers were called using the Operon kit primer name followed by the molecular weight of the polymorphic band (e.g. M02-1150).
By mapping sequence reads to a reference sequence comprising the Brassica unigene set, a total of 225,011 SNP markers were called (Supplementary Table S2).
Genetic markers were called using the Wilcoxon sign rank test using the 10 PM probe intensities for allele 1 versus the 10 PM probe intensities for allele 2 (P-value ≤.10).
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