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Use Smart marker to filter duplicates for removal.
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All genic-based data sets were filtered during dataset development to eliminate SNPs near predicted intron boundaries (Hulse-Kemp et al. 2014; Ashrafi et al. 2015; Zhu et al. 2014) so SNPs and flanking sequences could be aligned directly with genomic-based markers to filter putative SNPs as indicated above.
Because the EC33-gal × YPG312 cross contained fewer progeny, a more stringent threshold of 5% of strains was used to filter markers.
> The Gramene Markers database allows users to filter by, and export attributes related to species, germplasm, name/synonym, library/source and related (corresponding) entities.
The SLAFs were further screened to filter out markers unsuitable for genetic map construction.
Therefore, we intended to filter out the markers with low variance prior to clustering.
The polymorphic SLAFs were further screened to filter out unsuitable markers for genetic construction.
The Interquartile Range method was used to filter out suspicious markers and compute the scaffold positions on chromosomes.
The integrative analyses of epigenomic and genomic profiles provide us with an effective tool to filter biologically functional epigenetic markers for future epidemiological studies.
Based on the Infinium technology, putative markers were filtered to maximize value from this technology, i.e., to select for unique one-beadtype assays to populate the array.
Markers were filtered to exclude loci with unknown positions, monomorphic loci and loci with a minor allele frequency <0.05.
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