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Case 2. (red curve and round marker); the diversity order is.
Case 3. (green curve and upper-triangular marker); the diversity order is.
Case 1. (black curve and square marker); the diversity order is calculated by.
For this marker the diversity was significantly higher in tetraploids than in diploids of both species (p < 0.05; Figure 4).
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A haplotype is a single nucleotide polymorphism (SNP) sequence and a representative genetic marker describing the diversity of biological organs.
Ninety-eight out of four hundred and eighty pairs of SSR markers showed the diversity between the Xinong1A and the zebra-15, their F2 population was then used for gene mapping.
The goal was to compare the resolution obtained with the D3-marker with the diversity estimated from morphospecies.
High-resolution melt analysis was used to evaluate 33 SNP markers across the diversity panel.
To investigate the effect of removing all of these markers from the diversity analysis, we performed a type of analysis that would provide 40 discrete clusters of varieties (see Additional file 14).
Based on Figure 3A, we assumed that markers in the diversity data that disagreed up to 5% with the consensus calls were providing identical information with occasional miss-scores.
LD mapping requires the ability to genotype hundreds of accessions with thousands of markers, and the diversity of Musa accessions available in germplasm banks from unstructured populations is appropriate for this approach.
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