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Three independent experiments were conducted to determine the reliability, accuracy and minimal detectable difference of the marker set and model.
On this marker set, we performed single-marker transmission disequilibrium tests (TDTs) [37] using PLINK v1.07.
The full marker set can be downloaded as a text file at http://www.genenetwork.org/dbdoc/BXDGeno.html.org/dbdoc/BXDGeno.html
For example, one could envision partitioning a 100 marker set into three groups.
Figure 1 shows the sensitivity of each marker set for detecting population admixture.
Because the results from both marker sets were broadly similar, only results from the larger marker set are presented here.
A previously described marker set was used to scan the genome for association [Wong et al, 2008].
It was therefore included in this study to provide a full characterisation of the entire moa microsatellite marker set.
The marker set was filtered according to pair-wise LD (r2 cut-off = 0.2) in order to remove correlated markers.
So the selected marker set is TS16.
This "additional marker set" contained two more markers per chromosome than the original IM marker set.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com