Sentence examples for marker phase from inspiring English sources
The appropriate marker phase was established from the sexed progeny in each family.
The structure of this population enables marker phase to be unambiguously determined, particularly for those markers with alleles shared in common by both parents.
The marker phase analysis performed from the Clementine and sweet orange mapping data confirmed this hypothesis, and allowed the identification of the haplotype structures of the mandarin and sweet orange gametes that produced the Clementine.
Deterministic methods [ 17, 18] only use informative markers (where marker phase can be inferred without uncertainty) and therefore only uses part of the available information, whereas iterative methods [ 15, 16] provide better precision in IBD estimation, but also higher computational demand.
Because marker phase is often unknown (i.e. a heterozygous genotype is not known to be '1 2' or '2 1'), the Viterbi algorithm is actually applied to resolve both haplotypes of an individual simultaneously, resulting in a mosaic (as explained above) for each of the two haplotypes and resolving the phase of heterozygous genotypes ('1 2' or '2 1'2.
Marker phase was determined by the Phasing algorithm (http://math.berkeley.edu/dustin/tmap/; [113]), which provides LG assignment and ordering of loci.
A singleton is a locus whose phase is different from both the marker phases immediately before and after.
Initially, the program phasing was used to define the marker phases in each family in the pedigree.
For each linkage group, the haplotypes of sweet orange and Clementine were inferred from SNP marker phases given by JoinMap.
The probability of the QTL genotype π(Qq| M ij ) was calculated based on the marker genotype of the individual and its non-recurrent (backcross) parent at flanking markers in each interval, assuming that marker phases are known.
Heterozygous markers of non-recurrent parents were assumed informative, through the combination of known marker phases and closely linked flanking markers, so that the recurrent or non-recurrent grand-parent of both alleles could be inferred.
