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In the Poaceae, marker order is highly conserved within syntenic 'genome blocks' between genera [ 8].
Regression of RG on ML marker order is greatly improved for 32 framework markers.
The marker order is the same for all homoeologues, although some contain fewer or no segregating loci.
One chromosome, Omy20/Ck06 is conserved between the Chinook and rainbow trout, but marker order is not.
If a particular marker order is identified in two independent populations of the same species, the evidence for rearrangements becomes much greater.
There is therefore a need for imputation methods designed specifically for nonmodel organisms in which genomic resources are poorly developed and marker order is unreliable or unknown.
Similar(36)
The optimal overall marker order was inferred following the protocol described by Niehuis et al. [33].
The expected marker order was confirmed using the "flips" option of Cri-Map v2.
The marker order was finalized using RECORD [ 55].
Local marker order was determined by multipoint analysis.
When a better marker order was established after FLIPS5, marker order was resolved and FLIPS5 was re-run until no further changes were apparent.
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