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The average marker interval was maximum in C3 (8.23 cM) while it was lowest in C10 (5.78 cM).
The QTL in this marker interval was estimated to be responsible for between 5.89 and 13.86% of the genetic variation in somatic cell score.
Average marker interval was 10.6 cM.
The average marker interval was 5.8 cM.
The average marker interval was 17.6 cM (sex-averaged map distance).
The size distribution of the marker interval was strongly skewed with many small intervals and only a few large intervals.
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The recombination rate for each marker interval is computed using Haldane's mapping function.
If the marker interval is very short we fit only a one-degree polynomial to the endpoint data, and if the marker interval is unusually long we insert a pseudomarker with no genotype information at the midpoint.
The assumption that is made for genetic diversity in the ungenotyped marker interval is different for GD_IBD and heterozygosity.
In the implementation, the proper marker interval is first located and the corresponding polynomial coefficients are retrieved.
Progenitor haplotype probabilities for each marker interval were inferred using the HAPPY R package (Mott et al. 2000) and an additive model.
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