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The phenotypic values of complex traits, along with molecular marker information, were used to perform EAM.
Cel files with the normalized expression data, and additional tumor marker information, were deposited in the GEO repository (GSE5847).
Then, the corrected phenotypes along with SSR marker information were used to carry out genome-wide association studies for main-effect QTLs, environmental interactions and QTL-by QTL interactions by ANOVA.
Moreover, the disease resistance QTL locations identified using corresponding marker information, were also highly biased and were similar to the locations of the NBS-LRR genes.
Reliabilities of genetic values of young animals (less than one year old) obtained with and without marker information were compared to assess the efficiency of MAS for evaluation of milk, fat and protein yields and fat and protein contents.
IBD probabilities were calculated between the existing haplotypes in the simulated population for each marker interval, by combining linkage disequilibrium and linkage analysis information, where both pedigree and marker information were used.
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Composite map marker details, component map(s) marker origins and multicopy DArT marker information is presented in Additional file 1. Marker-order correlations between composite map and component map linkage groups; the GU-SA component map is not shown as this map was used as the seed-map (i.e. provided a fixed-order and all correlations were 1.0).
This DNA marker information is also useful for HWC2 mapping.
The marker information is listed in Additional file 8: Table S1.
Risk marker information was categorized into common domains, and risk markers were consolidated where possible (not shown).
Risk marker information was extracted and evaluated for the most commonly examined variables across the 29 eligible studies: sex, age, white race, psychiatric disorders, SUDs, and urban/rural residence.
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