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Composite map marker details, component map(s) marker origins and multicopy DArT marker information is presented in Additional file 1. Marker-order correlations between composite map and component map linkage groups; the GU-SA component map is not shown as this map was used as the seed-map (i.e. provided a fixed-order and all correlations were 1.0).
This DNA marker information is also useful for HWC2 mapping.
The marker information is listed in Additional file 8: Table S1.
To confirm the chromosomal localization of the Z3 locus, we initially mapped the z3 mutation using 291 F2 plants with the z3 mutant phenotype, 9 simple sequence repeat (SSR) markers, and one sequence-tagged site (STS) marker distributed on chromosome 3. SSR marker information is available in GRAMENE (http://www.gramene.org).org
The method is based on a genetic model containing both the direct effects and maternal effects of an endosperm QTL and on an experimental design termed two-stage hierarchical design, in which the trait information is obtained from F3 endosperms and molecular marker information is obtained from F2 plants and F3 embryos (plants).
The microsatellite marker information is accessed from MySQL database.
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Risk marker information was categorized into common domains, and risk markers were consolidated where possible (not shown).
Risk marker information was extracted and evaluated for the most commonly examined variables across the 29 eligible studies: sex, age, white race, psychiatric disorders, SUDs, and urban/rural residence.
The phenotypic values of complex traits, along with molecular marker information, were used to perform EAM.
Cel files with the normalized expression data, and additional tumor marker information, were deposited in the GEO repository (GSE5847).
Then, the corrected phenotypes along with SSR marker information were used to carry out genome-wide association studies for main-effect QTLs, environmental interactions and QTL-by QTL interactions by ANOVA.
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