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Exact(23)
These markers, combined with the male-inherited component of the 3∶1 marker genotypes, are used for constructing the final linkage map [25], [26], [36].
Different from the backcross population, the conditional probabilities of a QTL genotype given marker genotypes are expressed in terms of the proportion of recombinant homozygotes [57].
This method also allows the use of an empirical variance-covariance estimator for the statistic, which is consistent when sibling marker genotypes are correlated (e.g. when the analysis includes multiple affected sibs) [55].
With GBS, several marker genotypes are missing and, even after imputation, uncalled genotypes are still present.
The most desirable markers for MAS are "co-segregating", where marker genotypes are completely consistent with plant phenotypes in segregating breeding populations.
Moreover, when marker genotypes are centered and standardized to a null mean and unit variance MS X equals the number of markers (p).
Similar(37)
Ten or fewer marker genotypes were missing in 91% of the genotyped individuals.
The data for marker genotypes were simulated in terms of the recombinant homozygote proportion (R).
For each marker, genotypes were scored automatically using GeneMapper 3.7 (Applied Biosystems) and manually verified and corrected in case of automatic scoring errors.
All ambiguous marker genotypes were deleted.
The marker genotypes were compared with the PhtjR gene phenotypes.
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