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The 16S rRNA gene is the most commonly used marker for inferring the phylogenetic relationship among bacterial species due to its highly conserved nature [9].
The nuclear-encoded SSU rRNA was chosen as the molecular marker for inferring phylogenetic relationships among the major ochrophyte lineages and the timeframes within which the photosynthetic heterokonts originated and diversified.
The rpoB gene has also been proposed as a useful marker for inferring bacterial phylogeny (7, 8 ).
Congruence of rDNA and protein-coding gene analysis support the relevance of SSU rDNA as a marker for inferring myxosporean phylogeny.
We propose that SSU rDNA is a reliable marker for inferring myxozoan relationships, even though SSU rDNA analysis markedly disagrees with the current taxonomy.
In the age of next-generation sequencing, microsatellites remain the most polymorphic and informative genetic marker for inferring species population genetics.
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SSR markers with lower mutation rates with three-base or complex motifs are more reliable markers for inferring interspecific relationships.
We are currently using these markers for inferring genetic diversity, spatial genetic structure, and gene flow in C. legalis.
We are currently using these markers for inferring genetic diversity and spatial genetic structure in these species.
We used a simulation model with two host species and known transmission rates (within and between species) to evaluate the utility of these markers for inferring CST.
Our mitogenomic phylogenies provide robust nodal support at a range of levels, demonstrating that mitogenomes are both accurate and efficient molecular markers for inferring butterfly phylogeny.
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