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In the BRR, marker effects are IID normal random variables.
In multilevel models, specific marker effects are estimated for each population.
The marker effects are obtained by solving the optimization problem, where is a regularization parameter.
In Bayesian Lasso, the marker effects are assigned a double exponential prior.
In RR BLUP B, marker effects are initially estimated and ranked using RR BLUP.
In (AD), marker effects are assessed from X ¯, considered as fixed.
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An alternative to estimating GEBVs by summing up all the marker effects, is to estimate GEBVs directly within the framework of mixed model equations (MME).
Family main effects were always included and marker effects were nested in families.
Furthermore, when π is close to 1, the sampled value for most marker effects is null.
Permutated marker effects were obtained from the posterior means of a 250,000 iteration chain.
The estimation of marker effects is then given by the mixed model equations [ 76].
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