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Chromosome wise marker density varied from 6.21 cM/marker in chromosome 11 to 19.25 cM/marker on chromosome 3 (Table 3).
The marker density varied across the FLW chromosomes based on physical distance in kilobase.
The marker density varied, with an average distance between neighboring markers ranging from 0.9 cM in LG 9 to 2.7 cM in LG7 (Table 4).
The average marker density varied from 1.9 cM for chromosome 2H (228 cM/120 SNPs) to 3.1 cM for chromosome 7H (230 cM/75 SNPs).
The length of each linkage group ranged from 54.9 to 99.6 cM, and the marker density varied from 123 to 274 across the linkage groups.
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The marker density varies between 1.98 cM/marker (for LG8) to 4.08 cM/marker (for LG6).
Indeed, the direct and inverse relationship between expected LD (r) and population recombination rate (r = 1/(4Nec +1)) has obvious consequences for genomic prediction, because both the training population size and marker density vary with Ne, the effective population size [ 16, 17].
Although the marker density varies within and between linkage groups, there are only two gaps of >20 cM, both on LG11.
Depending on the populations, the needed marker density varies, but the prospects of using association studies to support breeding programs for our species are quite interesting.
The 250K Mapping array has SNP probes placed average distance of 10 KB between probes therefore the copy number segments we are identifying are a minimal size of 100 KB, Although, in practice, this will not be the case on every chromosomal region because the marker density varies significantly across the genome.
Clonal density varied between mice.
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