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The increased marker density provides much improved delineation of regions of high and low recombination.
Higher marker density provides the resolution to observe local genetic exchange that results in CNV.
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The high marker density provided by GBS precluded the need for estimating conditional probabilities of marker genotypes.
The increased marker density provided by the integrated map is a valuable resource that increases the availability of markers in regions of interest, thus assisting in fine mapping.
Together, the enhanced marker density provided by the 50 K chip and the complementary analyses reported here suggest that several QTL are present in this genomic region.
The reported results showed that the marker density provided by the consensus map was sufficient to identify chromosome regions harboring numerous small effect QTLs for heading date, at a resolution level not possible with traditional bi-parental mapping studies.
Sufficient marker density provided, GS potentially makes use of all the genetic variance present in an analyzed population by summing the effects of all individual markers [ 7] and thus can be expected to also include information from small effect gene loci that cannot be captured by traditional QTL determination via MAS [ 9].
Hence, higher marker densities provide no advantage on the increase of the QTL detection power.
Addition of these EST- and BAC-based SNPs to the bovine linkage map not only increases marker density, but provides connections to gene-rich physical maps, including annotated human sequence.
At low marker densities, haplotypes provide higher accuracy than genotypes when included in genomic evaluation [ 1, 16].
To increase marker density and to provide common markers to anchor the LGs from different populations, new markers from different sources were assayed.
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