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We did this because the GBS marker data contain a large proportion of missing values.
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The data contain 64 markers and sex was included as a factor.
These results show that pathway-based outlier analysis is useful for the study of complex disorders, and add to the growing body of evidence that peripheral blood gene expression data contain useful markers for neurodevelopmental disorders.
The first three excel data contains the marker coded values for cycles 0, 1 and 2, while the excel data DATA_SET-3_Phenotypic_Cycle-0 conthens the phenotypic information of cycle 0 (Training population).
Of the 373 possible unique variables, the data contained 236 markers for environmental chemicals, 104 of health biomarkers, and 33 questionnaire responses.
A missing genotype was coded as 0. The data contained about ∼4.9% missing marker genotypes and a few missing phenotypes.
For example, HD data (e.g. 777 k) will have higher LD measures for adjacent SNPs than medium density data (e.g. 54 k), meaning that in HD marker data, more haploblocks, containing more markers within a haploblock, are likely to be built compared with the haploblocks in 54 k data.
Recall the data contained 16 e-traits and 95 markers for 211 individuals.
The completed 3D-PAT data set for the mannequin study reported nine sets of data containing the 3D-coordinates of each of the 14 reflective markers.
Thus, haploblocks may reduce the number of variables in marker data that are denser than HD data, while keeping all the SNP information that the data contains.
The table of data contained an error.
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