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The common practice to eliminate variation due to marker-specific hybridization is to normalize signal intensities with respect to a reference model on a marker basis.
Similarly, MRD between yield type and sugar type inbreds was calculated on an individual marker basis.
The remaining promoters examined here, did not display, on a single marker basis, statistically significant variation between tumour types.
Furthermore, on a per marker basis, the spurious associations become smaller, since they are spread over more markers.
Once the markers significantly associated with the traits were identified, ANOVA was conducted on a single marker basis at P < 0.05 to estimate QTL effects.
The Bonferroni Step-down correction [ 56] was applied to correct for multiple testing as the p-values for the MLM analysis are expressed on a single marker basis in TASSEL.
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Instead, the optimal number must be determined on a marker-by-marker basis.
On a per-marker basis, no chromosome pairing model can be excluded for either S2 class (Table 2).
Concordance was analyzed on a per-marker basis to explore correlations with MAF and R, as well as to determine the types of discordance present.
First, there are several potential ways to estimate F: from pedigrees, on a marker-by-marker basis, and from runs of homozygosity.
Additionally, for biomarkers newly introduced into clinical use, especially if therapeutic response is dictated by level of expression, the optimal size of tissue sample must be determined on a marker-by-marker basis.
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