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The bQTL package (http://famprevmed.ucsd.edu 16080/faculty/cberry/bqtl/) in R was used to perform a chi-squared test for marker association (segregation distortion).
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The mapping population was genotyped with all polymorphic markers and marker segregation data were analyzed by the goodness of fit test for a 1 2 1 segregation ratio.
The ratio of marker segregation was calculated by the χ test and markers showing significantly distorted segregation (P-value <0.01) were excluded from the map construction.
The marker segregation was recorded after three weeks.
Thus, it is difficult to infer genetic control from observed trait segregations without concomitant marker segregation analysis.
The marker segregation ratios were examined using the chi-square test.
Also, possible errors in genotyping scoring may distort marker orders and segregation ratios.
Chromosomes 1, 2 and 3 were not distorted in their marker segregation.
The ratio of marker segregation was calculated by Chi-square test.
Technical problems such as null alleles can yield distorted marker segregation ratios.
The conformity of marker segregation with Mendelian inheritance rules was checked by Chi-square tests.
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