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Blocks were only marked as homoeologous if a minimum of two SNP/IP markers from the same block region were placed on both genomes.
Fixations were identified from these eye movements based on the velocity of eye shifts: periods when the velocity was less than 40 visual degrees per second were marked as fixations (with a minimum duration of 50 ms).
In each panel, the horizontal axis measures time in hours, and the Dst-minimum is marked as the zero point demonstrated by the black vertical dotted line, which indicates the end of the storm main phase and the beginning of the recovery phase during the evolution of the geomagnetic storm.
The model with the minimum AIC value is marked as the most economical model (Johnson et al. 1995).
Statistical significance of the data were analysed by the two-tail Student's t-test with a minimum significance level set at P<0.05 (marked as * P<0.05 and ** P<0.01).
Interestingly, the light hole band maxima moves even above the conduction band minima in the region of the NW bottom marked as a black curve in Fig. 6a with hydrostatic strain more than ∼5.0%.
Germline SNPs identified by GATK and/or qSNP were marked as 'PASS' if they contained at least five sequence reads containing the variant with a minimum of four novel starts.
To determine valid SNPs, the minimum similarity score per polymorphic site was set at 0.75 and the minimum similarity score of all polymorphic sites at 0.8, INDEL SNPs were marked as low quality and removal of low quality at sequence ends was disabled.
For every marked ripple, the troughs were detected as the minima of the filtered LFP signal and the deepest trough was marked as the time point representing the respective SPW-R event.
A protein from a genome was marked as shared if it had at least one BLAST match to a protein in the other genome satisfying the minimum sequence similarity criteria (e-value ≤ 1 × 10-5, localignmentsnts covering at least 70%).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com