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Of 948 of the 1078 Ring1b bound genes [21] represented on our microarray chromatin-state maps were retrieved for the histone modifications H3K4me3 and H3K27me3 [30].
Hi-C interaction maps were retrieved for IMR90 cells [ 1].
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Electron density maps are retrieved from the EDS [19, 20] or from the PDB_REDO databank, which are updated weekly with new data from the PDB.
To detect SNPs that can be used directly in the sequencing-based genotyping, the genotypes of any pair of lines in the rice haplotype map were retrieved and compared with each other.
The South Carolina county map was retrieved from the US Census TIGER Line Files for 2011 [ 26].
The method is appropriate in transmission as well as in reflection configuration and quantitative phase map are retrieved digitally by a single interferometric recording.
Map positions were retrieved from the current bovine genome sequence assembly map of BTA6 at NCBI (Btau build 4.0 [ 31]).
Marker mapping data were retrieved from a published inter-specific Coffea linkage map [ 11] and can be visualized with CMap [ 12], integrated in MoccaDB.
The sequences of the physically mapped cDNAs were retrieved from Genbank.
Genes mapping to TARs were retrieved from the Ensembl database with the Biomart data mining tool [ 20] and mapped (PLINK analysis) to the Reactome database [ 21].
For each interval, paired reads that were initially mapped to Galgal4 were retrieved by name using Picard (http://broadinstitute.github.io/picard), and remapped to the LTR of the EAV-HP genome (Fig. 1d), generating an interval-specific set of paired-reads.
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