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More importantly, a fraction of artifacts commonly maps to reference genomes and can thus influence the biological interpretation of the libraries.
The EFO is an application ontology an ontology engineered for domain-specific use or application focus and whose scope is specified through testable use cases and which maps to reference or canonical ontologies.
We designed the Stitch algorithm to use alignments of query consensus genome maps to reference in silico maps in order to predict the higher order arrangement of sequence scaffolds (Fig. 3).
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Statistics of NGS libraries mapped to reference genome.
Experts and policy-makers have recommended that interface terminologies be mapped to reference terminologies.
All clean tags were mapped to reference sequences using bowtie software and allowing 2-bp mismatch.
Immunoprecipitated DNA fragments were sequenced using the pair-end-tagging approach and mapped to reference genome (mm8) [22], [22].
Clean reads were mapped to reference sequences using SOAPaligner/soap2.
Clean reads were mapped to reference sequences or reference gene set using SOAP aligner/SOAP2 [ 67].
Statistics of H. sinensis transcriptome mapped to reference genome and reference gene.
The summary of mapping result (reads mapped to reference genome, Indica rice database).
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