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The use of BACs containing genes/markers represents a promising alternative for a better physical mapping for cichlids, and the integration of BAC-FISH maps to genomic data stands for a powerful tool to support a better assembling of genomes, contributing in the establishment of a framework for comparative genome-wide studies.
Junction reads are identified, when one end-tag uniquely maps to the "bait" and the other end-tag maps to genomic locations > 300 bp away on the same chromosome (intra-chromosomal interactions) or to a different chromosome (inter-chromosomal interactions).
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Disease-associated genes were mapped to genomic coordinates, resulting in a set of genome regions for each disease.
All miRNAs discovered were mapped to genomic locations in the present version of the Salmo salar genome assembly.
The 293 lncRNAs that map to genomic intervals that exhibit primary sequence conservation across all of the anopheline genomes that we analyzed possess 164 distinct secondary structural features.
The average size of a QTL region is 0.54 Mb and 67% of the QTLs were mapped to genomic regions less than 0.5 Mb (Figure 2C).
Hierarchical clustering was conducted between arrays and probe signal mapped to genomic position and corresponding ORFs using complete linkage and a Spearman correlation.
Then, the identified methylation peaks were mapped to genomic transcripts.
The QTL mapping approaches discussed above currently map to genomic intervals containing multiple genes.
To our knowledge, only four map to genomic sites not previously documented for introns.
IGV was designed to accommodate any data that can be mapped to genomic coordinates.
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