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The parameter in row (b) of Table 1 is the probability that a single read maps to gene g for a sample in condition i.
Coverage of each locus in the genome by RNA-seq reads and MS/MS peptides was calculated by comparing base pair maps to gene regions using a custom R script (see Additional file 1).
We determined the high-resolution genome-wide DNA methylation maps of these two primary cultures using bisulfite-sequencing and compared these maps to gene expression profiles obtained using high-throughput RNA-sequencing, to evaluate the role of CG methylation in cell type specificity determination.
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SNP-level findings have been mapped to gene level findings in Sect.
IPI numbers retrieved from Mascot were mapped to GENE identifiers using the NCBI mapping.
Resultant probesets mapped to gene identifiers using the annotation packages in BioConductor.
Sliding windows (see above) that showed statistically significant differences between CVS and MBCs were mapped to gene bodies and promoters.
gambiae piRNA population map to gene transcripts.
Of the 1,015 genes, 768 were mapped to gene networks defined by this tool.
The latter includes many genes represented by clone IDs not properly mapped to gene symbols.
Of the tDMRs, 13% mapped to gene body CpG islands and 25% to CpG islands shores.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com