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DArT markers have been successfully applied to genetic maps and diversity analyses of barley germplasm.
One can search for markers, DNA sequences, maps and diversity data by using the corresponding multi-option query forms.
By using these SSR markers, good progress has been made in developing the genetic maps and diversity studies in AA- and BB-genome groundnut species [ 8, 9, 16- 22].
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As can be seen by the number of polymorphic SNPs detected by C6AIR in 18 bi-parental populations commonly used for mapping in rice (Table 1), the pairwise polymorphism rate is more than sufficient for QTL mapping and diversity analyses for all but the most closely related accessions (such as temperate japonica X temperate japonica).
SNP markers have been widely used in a large range of living organisms both for genetic mapping and diversity assessment.
Sandlin et al. [ 31], Ren et al. [ 32], and Nimmakayala et al. [ 5] developed 1,073, 386, and 384 SNPs, respectively, for genetic mapping and diversity studies in watermelon.
This work will allow future applications such as mapping and diversity studies, accession identification and genomic-research assisted breeding within V. vinifera.
The multi-allelic SSR markers are currently widely applied for both genetic mapping and diversity analyses, despite their cost for development and their limited throughput capabilities [ 44].
Complementary to assaying single loci for MAS, whole-genome profiling can be utilized for genomic section, QTL mapping, and diversity analysis [ 11].
This observation indicates that transcriptome comparison is an efficient strategy to identify SNP markers for molecular genetic mapping and diversity analysis.
The platform will also be useful for future mapping and diversity studies, and will be essential in order to accelerate the process of breeding new and better-adapted squash varieties.
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